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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
ChIP-seq
62
ATAC-seq
11
snATAC-seq
6
DNase-seq
5
Hi-C
4
MeRIP-seq
2
RRBS
1
FAIRE-seq
1
pCHi-C
Assay category
Transcription
153
DNA binding
80
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
103
histone
103
histone modification
56
broad histone mark
47
narrow histone mark
35
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
70
August, 2017
51
October, 2018
20
November, 2019
18
May, 2022
18
October, 2019
13
February, 2023
11
September, 2018
8
January, 2021
November, 2018
6
March, 2020
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
2
July, 2019
2
May, 2019
1
August, 2021
1
August, 2022
Available data
182
bam
138
bed narrowPeak
126
bigWig
126
fastq
66
bigBed narrowPeak
27
bed bed3+
19
bed broadPeak
16
tagAlign
5
bigBed broadPeak
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bedpe
1
hdf5
Organism
238
Homo sapiens
Biosample type
207
tissue
23
primary cell
15
cell line
Organ
545
liver
380
pancreas
260
brain
epithelium
229
kidney
227
heart
202
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
89
adipose tissue
87
musculature of body
83
artery
54
blood
54
bodily fluid
42
eye
38
nerve
23
embryo
22
vein
18
ureter
16
spleen
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
222
AMP
23
T1D
Genome assembly (visualization)
170
hg19
140
GRCh38
Lab
195
AMP-T2D consortium
39
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
33
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
assay_slims!
Transcription
files.file_type!
zippedFastqFolder
month_released!
November, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
245 results
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ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
RRBS
FAIRE-seq
pCHi-C
tissue
islet of Langerhans
50
58
7
1
3
4
1
1
body of pancreas
35
4
2
pancreas
16
4
2
1
1
1
endocrine pancreas
16
primary cell
pancreatic endocrine cell
23
cell line
Panc1
13
1
1
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