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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
181
DNA binding
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
47
transcription factor
31
control
8
RNA binding protein
3
chromatin remodeller
Date released
392
November, 2017
234
October, 2019
218
June, 2019
193
August, 2017
120
May, 2019
104
May, 2021
95
May, 2020
94
December, 2017
87
November, 2018
79
April, 2019
74
October, 2018
46
September, 2018
39
November, 2019
34
August, 2021
34
December, 2018
27
February, 2021
25
January, 2019
24
February, 2018
18
May, 2022
17
July, 2019
15
October, 2017
11
September, 2017
3
March, 2020
2
November, 2020
1
March, 2019
Available data
198
fastq
193
bam
183
bigWig
142
bed narrowPeak
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
186
Homo sapiens
Biosample type
81
tissue
58
primary cell
54
in vitro differentiated cells
Organ
79
pancreas
71
connective tissue
29
epithelium
26
liver
17
adipose tissue
Project
193
AMP
Genome assembly (visualization)
163
hg19
160
GRCh38
Lab
193
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
month_released!
April, 2020
BIOSAMPLE
ASSAY
193 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
liver
25
islet of Langerhans
22
1
1
pancreas
14
white adipose tissue
12
adipose tissue
2
2
+ See 2 more…
primary cell
skeletal muscle myoblast
15
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
53
1
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