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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
DNase-seq
8
Hi-C
3
ChIP-seq
Assay category
16
DNA accessibility
8
3D chromatin structure
3
DNA binding
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
14
June, 2019
3
August, 2021
3
October, 2019
3
October, 2022
2
July, 2019
1
March, 2020
1
November, 2019
Available data
171
bam
155
bigWig
151
bed narrowPeak
110
fastq
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
8
tsv
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
27
Homo sapiens
Biosample type
26
primary cell
1
cell line
Organ
79
kidney
36
limb
36
musculature of body
36
pancreas
35
brain
33
heart
27
connective tissue
27
epithelium
18
ureter
16
vasculature
15
liver
14
blood vessel
6
adipose tissue
4
artery
4
eye
4
vein
3
embryo
2
nerve
1
spleen
Project
24
AMP
3
HPAP
Genome assembly (visualization)
21
hg19
19
GRCh38
Lab
24
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
audit script error
2
inconsistent ontology term
assay_slims!
Transcription
BIOSAMPLE
ASSAY
27 results
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DNase-seq
Hi-C
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
2
hepatocyte
1
3
brain microvascular endothelial cell
1
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 12 more…
cell line
EndoC_BH1
1
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