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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
23
DNase-seq
3
Hi-C
Assay category
24
DNA binding
23
DNA accessibility
3
3D chromatin structure
Target of assay
15
histone
15
histone modification
8
narrow histone mark
7
broad histone mark
7
transcription factor
2
RNA binding protein
2
control
Date released
19
August, 2017
18
June, 2019
4
October, 2019
3
August, 2021
2
July, 2019
2
November, 2018
2
September, 2017
Available data
360
bam
292
bed narrowPeak
288
bigWig
243
fastq
145
bigBed narrowPeak
80
zippedFastqFolder
50
bed bed3+
43
bed broadPeak
29
bigBed broadPeak
23
tagAlign
12
bed bedMethyl
12
bigBed bedMethyl
10
tsv
9
hic
8
bedpe bed3+
3
cool
3
hdf5
1
bedpe
1
tar
Organism
50
Homo sapiens
Biosample type
27
tissue
21
primary cell
2
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
50
AMP
Genome assembly (visualization)
48
GRCh38
42
hg19
Lab
50
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
assay_slims!
Transcription
BIOSAMPLE
ASSAY
50 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
21
body of pancreas
4
pancreas
2
primary cell
hepatocyte
3
1
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 9 more…
cell line
Panc1
1
1
See all biosamples
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