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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ATAC-seq
5
Hi-C
Assay category
10
DNA accessibility
5
3D chromatin structure
Date released
10
February, 2023
4
July, 2019
1
October, 2019
Available data
1845
bam
bed narrowPeak
1613
bigWig
987
fastq
948
bigBed narrowPeak
392
tagAlign
292
bed broadPeak
255
bigBed broadPeak
241
bed bed3+
101
zippedFastqFolder
89
txt
64
xls
53
tsv
28
bed bedMethyl
28
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
15
Homo sapiens
Biosample type
5
in vitro differentiated cells
5
tissue
4
primary cell
1
cell line
Organ
6
connective tissue
4
bone element
4
brain
4
skeleton
2
blood vessel
2
epithelium
2
vasculature
1
liver
1
pancreas
Project
15
AMP
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
15
AMP-T2D consortium
Audit category:
1
inconsistent assembly
assay_slims!
Transcription
files.file_type!
bed narrowPeak
organ_slims!
heart
BIOSAMPLE
ASSAY
15 results
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ATAC-seq
Hi-C
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
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