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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
15
ATAC-seq
4
WGBS
1
Hi-C
Assay category
Transcription
21
DNA binding
15
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
15
histone
15
histone modification
10
narrow histone mark
6
transcription factor
5
broad histone mark
1
RNA binding protein
Date released
21
August, 2017
7
August, 2020
4
March, 2020
4
November, 2018
3
September, 2020
1
October, 2017
1
October, 2019
Available data
277
bam
218
fastq
217
bigWig
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
9
tsv
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
3
cool
1
bedpe
1
hdf5
0
bed bedgraph
Organism
41
Homo sapiens
Biosample type
22
primary cell
16
tissue
3
cell line
Organ
41
pancreas
28
connective tissue
21
liver
18
epithelium
16
adipose tissue
8
brain
7
vasculature
6
blood vessel
6
heart
2
musculature of body
2
spleen
2
vein
1
blood
1
bodily fluid
1
embryo
1
limb
Project
31
AMP
10
HPAP
Genome assembly (visualization)
37
GRCh38
27
hg19
Lab
30
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
assay_slims!
Transcription
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
41 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
Hi-C
primary cell
pancreatic endocrine cell
12
pancreatic alpha cell
7
pancreatic beta cell
3
tissue
islet of Langerhans
9
3
body of pancreas
2
pancreas
2
cell line
EndoC_BH1
2
Panc1
1
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