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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
411
ChIP-seq
23
ATAC-seq
2
FAIRE-seq
1
DNase-seq
Assay category
411
DNA binding
26
DNA accessibility
Target of assay
324
transcription factor
84
histone
84
histone modification
81
recombinant protein
61
RNA binding protein
51
broad histone mark
33
narrow histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
50
December, 2017
49
November, 2018
40
October, 2018
23
August, 2017
14
September, 2018
6
October, 2019
5
September, 2017
1
May, 2019
Available data
796
bam
678
fastq
677
bigWig
655
bed narrowPeak
449
bigBed narrowPeak
105
tagAlign
84
bed broadPeak
80
zippedFastqFolder
70
bigBed broadPeak
bed bed3+
11
tsv
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
9
hic
3
cool
3
tar
2
hdf5
1
bed bed3
1
bedpe
1
vcf
Organism
431
Homo sapiens
Biosample type
299
cell line
102
tissue
22
primary cell
14
in vitro differentiated cells
Organ
353
liver
95
brain
84
pancreas
72
vasculature
70
blood vessel
64
heart
60
epithelium
54
blood
54
bodily fluid
48
limb
26
kidney
24
nerve
21
artery
20
connective tissue
14
musculature of body
12
spleen
11
vein
8
adipose tissue
2
eye
Project
437
AMP
Genome assembly (visualization)
433
hg19
403
GRCh38
Lab
437
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
Transcription
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
437 results
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ChIP-seq
ATAC-seq
FAIRE-seq
DNase-seq
cell line
HepG2
293
Panc1
6
tissue
liver
38
body of pancreas
26
endocrine pancreas
14
pancreas
13
1
right lobe of liver
7
1
+ See 1 more…
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
in vitro differentiated cells
hepatocyte
14
See all biosamples
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