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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
3
DNase-seq
2
ATAC-seq
2
WGBS
Assay category
106
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
65
histone modification
64
histone
40
transcription factor
33
broad histone mark
30
narrow histone mark
6
RNA binding protein
3
chromatin remodeller
1
control
Date released
334
November, 2017
206
June, 2019
183
October, 2019
125
May, 2021
113
August, 2017
96
May, 2019
73
November, 2018
72
December, 2017
72
May, 2020
65
April, 2019
40
May, 2024
32
August, 2021
30
December, 2018
21
January, 2019
20
July, 2019
20
May, 2022
16
February, 2018
9
October, 2017
8
January, 2018
6
February, 2021
5
October, 2018
3
February, 2023
1
November, 2020
Available data
119
fastq
114
bam
113
bigWig
93
bed narrowPeak
69
tagAlign
29
bed broadPeak
25
bigBed narrowPeak
15
bigBed broadPeak
14
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
Organism
113
Homo sapiens
Biosample type
48
in vitro differentiated cells
48
tissue
17
primary cell
Organ
pancreas
65
connective tissue
18
liver
17
adipose tissue
17
epithelium
13
musculature of body
Project
113
AMP
Genome assembly (visualization)
111
hg19
95
GRCh38
Lab
113
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
organ_slims!
bone marrow
pancreas
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
in vitro differentiated cells
adipocyte
47
1
tissue
liver
17
skeletal muscle tissue
13
white adipose tissue
12
adipose tissue
1
2
right lobe of liver
1
+ See 2 more…
primary cell
skeletal muscle myoblast
15
2
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