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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
3
ATAC-seq
1
ChIP-seq
1
MPRA
1
snATAC-seq
Assay category
Transcription
4
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
84
February, 2021
3
February, 2023
1
May, 2022
1
October, 2019
1
October, 2022
Available data
1986
bam
1817
bed narrowPeak
1767
bigWig
1042
bigBed narrowPeak
987
fastq
398
tagAlign
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
101
zippedFastqFolder
89
txt
64
xls
56
tsv
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
89
Homo sapiens
Biosample type
86
tissue
3
in vitro differentiated cells
1
cell line
Organ
84
bone element
1
brain
1
musculature of body
Project
90
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
87
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
90 results
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RNA microarray
ATAC-seq
ChIP-seq
MPRA
snATAC-seq
tissue
bone element
84
medial globus pallidus
1
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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