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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 31pCHi-C
  • 14ATAC-seq
  • 6WGBS
  • 3snDrop-seq
  • 2RNA microarray
Assay category
  • Transcription
  • 14DNA accessibility
  • 6DNA methylation
Date released
  • 32March, 2020
  • 12February, 2023
  • 9February, 2021
  • 2December, 2019
  • 1May, 2020
Available data
  • 1986bam
  • 1817bed narrowPeak
  • 1767bigWig
  • 1042bigBed narrowPeak
  • 987fastq
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 101zippedFastqFolder
  • 89txt
  • 64xls
  • 56tsv
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 56Homo sapiens
Biosample type
  • 26tissue
  • 18primary cell
  • 6cell line
  • 4stem cell
  • 2in vitro differentiated cells
Organ
  • 9pancreas
  • 8epithelium
  • 7kidney
  • 3heart
  • 2brain
  • 2connective tissue
  • 2intestine
  • 2liver
  • 1adipose tissue
  • 1adrenal gland
  • 1blood vessel
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1musculature of body
  • 1ovary
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vasculature
Project
  • 50AMP
  • 6HPAP
Genome assembly (visualization)
  • 2hg19
Lab
  • 50AMP-T2D consortium
  • 6Klaus Kaestner, Upenn
Audit category:
  • 13inconsistent ontology term
  • 2audit script error
assay_slims!
  • Transcription
BIOSAMPLE
ASSAY

56 results

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Clear Filters
pCHi-C
ATAC-seq
WGBS
snDrop-seq
RNA microarray
tissue
Ammon's horn1
adipose tissue1
adrenal gland1
aorta1
bladder (urinary bladder)1
primary cell
pancreatic alpha cell6
gabaergic neuron3
glutamatergic neuron3
microglial cell/astrocyte3
oligodendrocyte3
cell line
EndoC_BH11
HepG21
MCF-71
RCC 7860 VHL1
RCC 7860 vector1
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)1
embryonic stem cell1
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