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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
pCHi-C
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
RNA microarray
1
snATAC-seq
Assay category
Transcription
15
DNA accessibility
6
DNA methylation
Date released
32
March, 2020
12
February, 2023
9
February, 2021
2
December, 2019
1
July, 2025
1
May, 2020
Available data
1986
bam
1817
bed narrowPeak
1767
bigWig
1042
bigBed narrowPeak
987
fastq
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
272
bed bed3+
101
zippedFastqFolder
89
txt
64
xls
57
tsv
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tbi
1
vcf
Organism
56
Homo sapiens
Biosample type
27
tissue
18
primary cell
6
cell line
4
stem cell
2
in vitro differentiated cells
Organ
9
pancreas
8
epithelium
7
kidney
3
heart
2
brain
2
connective tissue
2
intestine
2
liver
2
musculature of body
1
adipose tissue
1
adrenal gland
1
blood vessel
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vasculature
Project
51
AMP
6
HPAP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
50
AMP-T2D consortium
6
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
13
inconsistent ontology term
2
audit script error
assay_slims!
Transcription
BIOSAMPLE
ASSAY
57 results
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pCHi-C
ATAC-seq
WGBS
snDrop-seq
RNA microarray
snATAC-seq
tissue
Ammon's horn
1
adipose tissue
1
adrenal gland
1
aorta
1
bladder (urinary bladder)
1
+ See 22 more…
primary cell
pancreatic alpha cell
6
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
cell line
EndoC_BH1
1
HepG2
1
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
embryonic stem cell
1
See all biosamples
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