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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
Transcription
4
DNA accessibility
Date released
3
February, 2023
1
May, 2022
1
October, 2022
Available data
1978
bam
1809
bed narrowPeak
1767
bigWig
1042
bigBed narrowPeak
987
fastq
398
tagAlign
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
101
zippedFastqFolder
64
xls
56
tsv
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
bed bed3
7
bed bedgraph
5
hdf5
5
txt
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
cell line
1
tissue
Organ
bone element
1
musculature of body
Project
5
AMP
Genome assembly (visualization)
4
hg19
Lab
3
Struan F.A. Grant, CHOP
2
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
files.file_type!
bed broadPeak
organ_slims!
bone element
BIOSAMPLE
ASSAY
5 results
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ATAC-seq
MPRA
snATAC-seq
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
tissue
skeletal muscle tissue
1
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