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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
Transcription
4
DNA accessibility
Date released
84
February, 2021
3
February, 2023
1
May, 2022
1
October, 2022
Available data
1149
bam
902
bed narrowPeak
872
bigWig
754
fastq
637
bigBed narrowPeak
246
bed broadPeak
245
bigBed broadPeak
235
bed bed3+
101
zippedFastqFolder
89
txt
71
tagAlign
64
xls
55
tsv
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
vcf
Organism
88
Homo sapiens
Biosample type
85
tissue
3
in vitro differentiated cells
1
cell line
Organ
84
bone element
1
musculature of body
Project
89
AMP
Genome assembly (visualization)
4
hg19
Lab
86
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
lab.title!
Stephen Parker, UMich
organ_slims!
blood vessel
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
89 results
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RNA microarray
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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