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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
Transcription
23
DNA binding
12
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
318
November, 2017
199
June, 2019
152
February, 2021
140
May, 2022
124
August, 2017
124
May, 2020
111
February, 2023
88
October, 2019
87
November, 2018
77
May, 2021
63
December, 2017
48
August, 2021
46
March, 2020
44
October, 2018
43
July, 2019
35
December, 2018
31
November, 2019
28
May, 2019
20
April, 2019
18
January, 2019
16
January, 2021
14
September, 2018
12
November, 2020
11
October, 2017
11
September, 2017
10
April, 2020
8
February, 2018
8
January, 2018
7
August, 2020
5
March, 2019
5
May, 2024
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
23
bed narrowPeak
18
bam
13
bigWig
8
tagAlign
2
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
47
Homo sapiens
Biosample type
24
cell line
21
in vitro differentiated cells
2
tissue
1
primary cell
Organ
20
liver
5
connective tissue
3
epithelium
3
pancreas
2
kidney
1
adipose tissue
Project
48
AMP
Genome assembly (visualization)
26
hg19
10
GRCh38
Lab
Katalin Susztak, Upenn
23
Bing Ren, UCSD
21
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
Transcription
lab.title!
Anna Gloyn, Oxford
Katalin Susztak, Upenn
target.investigated_as!
histone
BIOSAMPLE
ASSAY
48 results
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Clear Filters
ChIP-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
cell line
HepG2
15
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
10
adipocyte
1
1
osteoblast
1
1
tissue
islet of Langerhans
1
subcutaneous adipose tissue
1
primary cell
hepatocyte
1
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