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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
504
ChIP-seq
22
ATAC-seq
5
DNase-seq
4
Hi-C
3
pCHi-C
2
STARR-seq
2
WGBS
1
RRBS
1
whole genome sequencing assay
Assay category
504
DNA binding
Transcription
27
DNA accessibility
4
3D chromatin structure
3
DNA methylation
1
DNA sequencing
Target of assay
334
transcription factor
97
control
82
recombinant protein
70
histone
70
histone modification
58
RNA binding protein
47
narrow histone mark
23
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
August, 2017
53
November, 2018
51
May, 2020
26
August, 2021
20
May, 2022
6
October, 2019
3
July, 2019
2
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
Available data
493
bam
442
bigWig
432
fastq
423
bed narrowPeak
352
bigBed narrowPeak
66
tagAlign
63
bed broadPeak
63
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
544
Homo sapiens
Biosample type
387
cell line
133
tissue
15
in vitro differentiated cells
9
primary cell
Organ
544
liver
368
pancreas
294
epithelium
262
brain
229
kidney
227
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
83
artery
78
connective tissue
69
blood
69
bodily fluid
61
musculature of body
42
eye
38
nerve
33
adipose tissue
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
544
AMP
Genome assembly (visualization)
443
hg19
350
GRCh38
Lab
502
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
lab.title!
Anna Gloyn, Oxford
month_released!
August, 2017
BIOSAMPLE
ASSAY
544 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
STARR-seq
WGBS
RRBS
whole genome sequencing assay
cell line
HepG2
378
1
2
2
2
1
1
tissue
liver
97
20
2
1
1
right lobe of liver
10
1
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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