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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
53
ATAC-seq
32
DNase-seq
14
WGBS
5
pCHi-C
3
Hi-C
2
RRBS
1
RNA microarray
Assay category
Transcription
207
DNA binding
85
DNA accessibility
16
DNA methylation
3
3D chromatin structure
Target of assay
129
histone
129
histone modification
77
broad histone mark
52
narrow histone mark
44
control
34
transcription factor
16
RNA binding protein
Date released
57
April, 2019
57
August, 2017
40
May, 2024
36
February, 2023
36
June, 2019
23
October, 2018
21
May, 2019
14
February, 2021
14
July, 2019
7
October, 2019
6
March, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
November, 2018
1
November, 2019
1
October, 2017
Available data
204
bed narrowPeak
185
bam
181
bigWig
104
bigBed narrowPeak
44
fastq
36
bed bed3+
33
bed broadPeak
32
bigBed broadPeak
14
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
bedpe bed3+
4
tsv
3
hic
Organism
316
Homo sapiens
Biosample type
293
tissue
14
cell line
9
primary cell
1
in vitro differentiated cells
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
317
AMP
Genome assembly (visualization)
221
GRCh38
145
hg19
Lab
277
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
7
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
Transcription
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
317 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
RNA microarray
tissue
heart left ventricle
35
2
3
4
1
1
1
coronary artery
5
36
2
left cardiac atrium
40
1
subcutaneous abdominal adipose tissue
36
3
heart
14
18
1
1
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cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
in vitro differentiated cells
white fat cell
1
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