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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ATAC-seq
13
ChIP-seq
2
Hi-C
Assay category
26
DNA accessibility
Transcription
13
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
151
May, 2020
139
August, 2021
120
May, 2019
119
February, 2021
111
February, 2023
94
December, 2017
80
April, 2019
78
November, 2018
74
October, 2018
48
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
39
May, 2022
28
December, 2018
24
February, 2018
22
October, 2017
18
January, 2019
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
5
March, 2019
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
1
October, 2022
0
August, 2020
Available data
39
bam
37
bed narrowPeak
11
bigWig
2
bedpe bed3+
2
hic
Organism
41
Homo sapiens
Biosample type
21
tissue
15
cell line
5
in vitro differentiated cells
Organ
35
pancreas
15
epithelium
1
adipose tissue
1
connective tissue
Project
41
AMP
Genome assembly (visualization)
39
hg19
37
GRCh38
Lab
41
AMP-T2D consortium
Klaus Kaestner, Upenn
Audit category:
21
inconsistent ontology term
assay_slims!
Transcription
lab.title!
Klaus Kaestner, Upenn
organ_slims!
spleen
BIOSAMPLE
ASSAY
41 results
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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
19
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
13
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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