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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
15
ATAC-seq
10
MeRIP-seq
1
DNase-seq
Assay category
32
DNA binding
Transcription
16
DNA accessibility
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
5
control
5
nucleotide modification
Date released
340
November, 2017
322
August, 2017
277
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
80
April, 2019
74
October, 2018
71
November, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
4
October, 2022
3
March, 2019
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
48
bam
48
bed narrowPeak
47
bigWig
46
fastq
15
bigBed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
58
Homo sapiens
Biosample type
48
primary cell
6
cell line
4
tissue
Organ
56
pancreas
41
epithelium
2
connective tissue
Project
58
AMP
Genome assembly (visualization)
48
GRCh38
48
hg19
Lab
48
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
32
missing controlled_by
assay_slims!
Transcription
lab.title!
Mark McCarthy, Oxford
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
ATAC-seq
MeRIP-seq
DNase-seq
primary cell
pancreatic ductal cell
13
4
pancreatic acinar cell
8
3
pancreatic endocrine cell
11
pancreatic beta cell
4
pancreatic alpha cell
3
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cell line
EndoC_BH1
6
tissue
islet of Langerhans
4
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