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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
5
Hi-C
4
DNase-seq
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
91
DNA binding
Transcription
7
DNA accessibility
5
3D chromatin structure
3
DNA methylation
Target of assay
69
histone
69
histone modification
45
broad histone mark
24
narrow histone mark
18
control
4
RNA binding protein
4
transcription factor
Date released
47
October, 2019
45
May, 2019
6
July, 2019
6
November, 2017
June, 2019
3
March, 2020
Available data
100
bam
82
bigWig
75
bed narrowPeak
73
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
6
bed bed3+
6
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
1
tsv
Organism
107
Homo sapiens
Biosample type
76
tissue
31
primary cell
Organ
596
liver
463
pancreas
303
epithelium
232
brain
heart
181
connective tissue
162
vasculature
158
blood vessel
148
kidney
97
bone element
89
adipose tissue
83
limb
81
artery
69
blood
69
bodily fluid
44
musculature of body
38
nerve
35
eye
25
spleen
23
embryo
22
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
107
AMP
Genome assembly (visualization)
85
hg19
75
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
Transcription
lab.title!
Struan F.A. Grant, CHOP
month_released!
June, 2019
organ_slims!
heart
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
Hi-C
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
tibial artery
23
2
1
aorta
13
1
2
1
thoracic aorta
16
1
ascending aorta
16
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
endothelial cell of hepatic sinusoid
1
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