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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
DNase-seq
100
ATAC-seq
81
ChIP-seq
1
pCHi-C
Assay category
286
DNA accessibility
Transcription
81
DNA binding
Target of assay
46
histone
46
histone modification
38
narrow histone mark
31
control
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
406
November, 2017
283
October, 2019
265
August, 2017
217
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
134
August, 2021
120
May, 2019
107
February, 2023
94
December, 2017
86
November, 2018
80
April, 2019
51
October, 2018
48
March, 2020
46
September, 2018
43
July, 2019
40
May, 2024
40
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
22
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
7
August, 2020
7
January, 2018
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2022
1
March, 2023
Available data
312
bam
281
bigWig
236
bed narrowPeak
209
bigBed narrowPeak
186
bed bed3+
186
bed broadPeak
186
bigBed broadPeak
50
tagAlign
1
tsv
Organism
368
Homo sapiens
Biosample type
212
tissue
155
primary cell
1
cell line
Organ
81
kidney
53
liver
43
musculature of body
35
heart
32
limb
30
brain
20
epithelium
18
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
4
pancreas
2
artery
adipose tissue
Project
368
AMP
Genome assembly (visualization)
258
hg19
228
GRCh38
Lab
368
AMP-T2D consortium
Audit category:
30
inconsistent ontology term
assay_slims!
Transcription
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
368 results
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Clear Filters
DNase-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
50
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 34 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
+ See 45 more…
cell line
HepG2
1
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