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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
534
ChIP-seq
6
DNase-seq
5
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
534
DNA binding
Transcription
9
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
104
control
100
histone modification
99
histone
82
recombinant protein
58
narrow histone mark
57
RNA binding protein
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
54
August, 2017
53
November, 2018
51
May, 2020
6
October, 2019
4
August, 2021
3
July, 2019
2
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
Available data
519
bam
460
fastq
426
bigWig
407
bed narrowPeak
358
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
tsv
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
Organism
556
Homo sapiens
Biosample type
365
cell line
167
tissue
15
in vitro differentiated cells
9
primary cell
Organ
556
liver
312
pancreas
262
brain
218
epithelium
198
connective tissue
187
heart
169
vasculature
163
blood vessel
145
kidney
115
limb
96
bone element
90
adipose tissue
87
musculature of body
83
artery
61
blood
61
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
556
AMP
Genome assembly (visualization)
428
hg19
369
GRCh38
Lab
556
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
organ_slims!
skin of body
BIOSAMPLE
ASSAY
556 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
cell line
HepG2
360
1
1
1
2
tissue
liver
145
2
3
1
1
1
right lobe of liver
10
2
1
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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