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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ATAC-seq
48
snATAC-seq
47
WGBS
18
ChIP-seq
6
Hi-C
5
STARR-seq
1
whole genome sequencing assay
Assay category
Transcription
98
DNA accessibility
47
DNA methylation
18
DNA binding
6
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
101
May, 2022
33
February, 2021
26
August, 2021
7
August, 2020
3
October, 2022
3
September, 2020
2
March, 2019
Available data
101
zippedFastqFolder
43
fastq
24
bigWig
14
bed narrowPeak
6
tsv
5
bedpe bed3+
5
hic
3
cool
1
bedpe
1
vcf
Organism
175
Homo sapiens
Biosample type
147
primary cell
25
cell line
3
tissue
Organ
102
pancreas
99
epithelium
22
liver
2
kidney
Project
147
HPAP
28
AMP
Genome assembly (visualization)
20
hg19
11
GRCh38
Lab
2434
AMP-T2D consortium
228
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
organ_slims!
small intestine
urinary bladder
BIOSAMPLE
ASSAY
175 results
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Clear Filters
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
Hi-C
STARR-seq
whole genome sequencing assay
primary cell
pancreatic alpha cell
29
31
1
Langerhans cell
48
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
cell line
HepG2
18
1
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
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