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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
17
DNA binding
Transcription
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
RNA binding protein
1
broad histone mark
Date released
25
August, 2021
2
March, 2019
Available data
13
bed narrowPeak
13
bigWig
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
27
Homo sapiens
Biosample type
24
cell line
3
tissue
Organ
21
liver
3
pancreas
2
kidney
Project
27
AMP
Genome assembly (visualization)
16
hg19
1
GRCh38
Lab
2333
AMP-T2D consortium
207
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
35
Patrick T. Ellinor, Broad
27
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
month_released!
January, 2021
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
17
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
2
1
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