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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
18
DNA binding
Transcription
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
26
August, 2021
2
March, 2019
Available data
14
bed narrowPeak
14
bigWig
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
28
Homo sapiens
Biosample type
25
cell line
3
tissue
Organ
22
liver
3
pancreas
2
kidney
Project
28
AMP
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
2206
AMP-T2D consortium
228
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
month_released!
June, 2019
organ_slims!
skeleton
organ_slims!!
skeleton
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
18
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
2
1
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