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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
54
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
142
DNA binding
Transcription
72
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
transcription factor
8
control
5
RNA binding protein
Date released
164
May, 2021
38
May, 2022
18
February, 2023
16
January, 2021
Available data
152
bed narrowPeak
142
bigWig
102
bam
84
tagAlign
18
fastq
Organism
236
Homo sapiens
Biosample type
141
primary cell
60
tissue
30
in vitro differentiated cells
5
cell line
Organ
39
pancreas
20
liver
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
135
T1D
101
AMP
Genome assembly (visualization)
160
hg19
84
GRCh38
Lab
1950
AMP-T2D consortium
216
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
35
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
236 results
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ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
tissue
islet of Langerhans
29
6
liver
20
pancreas
4
thymus
1
in vitro differentiated cells
embryonic stem cell
25
5
cell line
EndoC_BH1
3
2
See all biosamples
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