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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
83
ATAC-seq
76
snATAC-seq
47
WGBS
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
Transcription
159
DNA accessibility
154
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
175
May, 2021
119
May, 2022
33
February, 2021
18
February, 2023
16
January, 2021
10
April, 2020
7
August, 2020
3
October, 2022
3
September, 2020
Available data
132
bed narrowPeak
132
bigWig
102
bam
101
zippedFastqFolder
84
tagAlign
61
fastq
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
383
Homo sapiens
Biosample type
287
primary cell
50
tissue
42
in vitro differentiated cells
5
cell line
Organ
138
pancreas
99
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
connective tissue
1
thymus
Project
147
HPAP
134
T1D
93
AMP
10
LungMap
Genome assembly (visualization)
143
hg19
94
GRCh38
Lab
2238
AMP-T2D consortium
227
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
384 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
monocyte
84
1
pancreatic alpha cell
29
31
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
1
pancreatic beta cell
16
16
1
+ See 14 more…
tissue
islet of Langerhans
29
6
lung
10
pancreas
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
cell line
EndoC_BH1
3
2
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