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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ATAC-seq
48
snATAC-seq
47
WGBS
3
Hi-C
Assay category
Transcription
98
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
101
May, 2022
33
February, 2021
7
August, 2020
3
October, 2022
3
September, 2020
1
October, 2017
Available data
101
zippedFastqFolder
44
fastq
11
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
1
bed broadPeak
Organism
148
Homo sapiens
Biosample type
147
primary cell
1
tissue
Organ
100
pancreas
99
epithelium
Project
147
HPAP
1
AMP
Genome assembly (visualization)
11
GRCh38
4
hg19
Lab
1880
AMP-T2D consortium
228
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
6
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
assay_slims!
Transcription
organ_slims!
liver
BIOSAMPLE
ASSAY
148 results
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ATAC-seq
snATAC-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
29
31
1
Langerhans cell
48
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
1
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