Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
34
ATAC-seq
18
snATAC-seq
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
Transcription
52
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
175
May, 2021
18
February, 2023
18
May, 2022
16
January, 2021
Available data
132
bed narrowPeak
122
bigWig
102
bam
84
tagAlign
18
fastq
Organism
227
Homo sapiens
Biosample type
140
primary cell
42
in vitro differentiated cells
40
tissue
5
cell line
Organ
39
pancreas
8
blood
8
bodily fluid
1
bone element
bone marrow
1
connective tissue
1
thymus
Project
134
T1D
93
AMP
Genome assembly (visualization)
140
hg19
84
GRCh38
Lab
AMP-T2D consortium
227
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
lab.title!
AMP-T2D consortium
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
227 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 10 more…
in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
29
6
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
Download