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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
34
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
89
DNA binding
52
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
narrow histone mark
12
transcription factor
8
control
RNA binding protein
Date released
111
May, 2021
18
February, 2023
18
May, 2022
16
January, 2021
Available data
82
bed narrowPeak
72
bigWig
62
bam
44
tagAlign
18
fastq
Organism
163
Homo sapiens
Biosample type
91
primary cell
40
tissue
27
in vitro differentiated cells
5
cell line
Organ
39
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
95
T1D
68
AMP
Genome assembly (visualization)
90
hg19
44
GRCh38
Lab
1896
AMP-T2D consortium
163
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
25
Bing Ren, UCSD
20
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
target.investigated_as!
RNA binding protein
narrow histone mark
BIOSAMPLE
ASSAY
163 results
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ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
44
1
CD8-positive, alpha-beta T cell
23
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
tissue
islet of Langerhans
29
6
pancreas
4
thymus
1
in vitro differentiated cells
embryonic stem cell
22
5
cell line
EndoC_BH1
3
2
See all biosamples
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