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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
46
ATAC-seq
5
Hi-C
4
DNase-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
99
DNA binding
Transcription
51
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
47
October, 2019
35
February, 2023
14
February, 2021
6
July, 2019
June, 2019
3
March, 2020
3
November, 2017
Available data
124
bed narrowPeak
117
bam
87
bigWig
74
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
1
tsv
Organism
158
Homo sapiens
Biosample type
117
tissue
27
primary cell
14
cell line
Organ
596
liver
463
pancreas
303
epithelium
232
brain
185
connective tissue
162
vasculature
158
blood vessel
135
heart
125
kidney
97
bone element
89
adipose tissue
83
limb
81
artery
69
blood
69
bodily fluid
44
musculature of body
38
nerve
35
eye
25
spleen
23
embryo
22
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
urinary bladder
Project
158
AMP
Genome assembly (visualization)
124
GRCh38
97
hg19
Lab
158
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
Transcription
month_released!
April, 2019
June, 2019
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
158 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
DNase-seq
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
5
36
tibial artery
23
1
2
aorta
13
1
2
1
thoracic aorta
16
1
ascending aorta
16
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
6
8
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