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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
5
RRBS
2
Hi-C
1
ATAC-seq
1
DNase-seq
1
pCHi-C
1
snATAC-seq
Assay category
32
DNA binding
Transcription
5
DNA methylation
3
DNA accessibility
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
26
August, 2017
11
June, 2019
3
March, 2020
1
January, 2018
1
July, 2019
1
May, 2022
Available data
23
bigWig
22
bed narrowPeak
15
tagAlign
14
bed broadPeak
11
bam
9
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
fastq
2
hic
1
bigBed broadPeak
1
tsv
1
txt
Organism
43
Homo sapiens
Biosample type
31
tissue
12
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
206
kidney
203
connective tissue
170
heart
169
vasculature
163
blood vessel
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
43
AMP
Genome assembly (visualization)
29
hg19
9
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
month_released!
April, 2019
organ_slims!
limb
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
RRBS
Hi-C
ATAC-seq
DNase-seq
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
psoas muscle
2
1
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
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