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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
8
snATAC-seq
1
ATAC-seq
1
GRO-seq
Assay category
42
DNA binding
Transcription
9
DNA accessibility
Target of assay
26
transcription factor
9
control
8
RNA binding protein
8
chromatin remodeller
7
histone
7
histone modification
4
narrow histone mark
3
broad histone mark
Date released
December, 2018
18
January, 2019
15
November, 2018
December, 2017
9
February, 2018
8
January, 2021
2
January, 2018
Available data
43
fastq
42
bam
35
bigWig
33
bed narrowPeak
27
bigBed narrowPeak
Organism
52
Homo sapiens
Biosample type
34
cell line
10
in vitro differentiated cells
8
primary cell
Organ
534
liver
467
pancreas
304
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
42
blood
42
bodily fluid
42
eye
38
nerve
22
vein
18
spleen
18
ureter
12
skeleton
11
lung
10
embryo
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
44
AMP
8
T1D
Genome assembly (visualization)
34
hg19
33
GRCh38
1
hg18
Lab
44
AMP-T2D consortium
8
Kyle Gaulton, UCSD
assay_slims!
Transcription
month_released!
December, 2017
December, 2018
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
snATAC-seq
ATAC-seq
GRO-seq
cell line
GM12878
33
1
in vitro differentiated cells
pancreatic endoderm
9
1
primary cell
peripheral blood mononuclear cell
8
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