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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
4
RRBS
2
Hi-C
1
ATAC-seq
1
pCHi-C
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
Transcription
4
DNA methylation
2
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
7
May, 2019
July, 2019
3
March, 2020
1
January, 2018
1
May, 2022
Available data
61
bigWig
60
bed narrowPeak
50
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
tsv
1
txt
Organism
81
Homo sapiens
Biosample type
70
tissue
11
primary cell
Organ
594
liver
465
pancreas
315
epithelium
255
brain
224
kidney
213
heart
201
connective tissue
162
vasculature
157
blood vessel
110
limb
97
bone element
90
adipose tissue
82
artery
81
musculature of body
42
blood
42
bodily fluid
41
eye
38
nerve
23
embryo
22
vein
18
spleen
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
81
AMP
Genome assembly (visualization)
66
hg19
46
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
month_released!
December, 2018
July, 2019
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
DNase-seq
RRBS
Hi-C
ATAC-seq
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
muscle of leg
7
13
muscle of arm
17
psoas muscle
2
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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