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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
9
ATAC-seq
5
DNase-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
79
DNA binding
14
DNA accessibility
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
21
control
17
narrow histone mark
3
other context
3
other post-translational modification
3
transcription factor
Date released
65
October, 2019
June, 2019
9
November, 2018
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
1
March, 2020
1
October, 2017
Available data
95
bam
71
bed narrowPeak
68
bigWig
62
bigBed narrowPeak
17
fastq
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
tsv
Organism
101
Homo sapiens
Biosample type
101
tissue
Organ
595
liver
463
pancreas
303
epithelium
232
brain
192
heart
185
connective tissue
162
vasculature
158
blood vessel
148
kidney
97
bone element
89
adipose tissue
83
limb
81
artery
44
musculature of body
42
blood
42
bodily fluid
38
nerve
35
eye
23
embryo
22
vein
18
spleen
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
101
AMP
Genome assembly (visualization)
73
GRCh38
71
hg19
Lab
101
AMP-T2D consortium
assay_slims!
Transcription
month_released!
December, 2018
June, 2019
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
1
2
tibial artery
23
1
2
spleen
13
1
1
2
1
muscle of leg
7
1
gastrocnemius medialis
4
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