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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
5
DNase-seq
5
Hi-C
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
65
DNA binding
Transcription
7
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
50
histone
50
histone modification
31
broad histone mark
19
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
45
May, 2019
21
October, 2019
5
July, 2019
3
June, 2019
3
March, 2020
3
November, 2017
Available data
74
bam
61
bigWig
55
bed narrowPeak
54
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
1
tsv
Organism
80
Homo sapiens
Biosample type
51
tissue
29
primary cell
Organ
595
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
artery
42
blood
42
bodily fluid
42
eye
38
nerve
23
embryo
22
vein
18
ureter
15
spleen
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
62
hg19
55
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
Transcription
month_released!
December, 2018
organ_slims!
adrenal gland
artery
target.investigated_as!
other context
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
DNase-seq
Hi-C
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
aorta
13
1
2
1
ascending aorta
16
1
thoracic aorta
16
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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