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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
GRO-seq
1
pCHi-C
Assay category
42
DNA binding
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
18
histone
18
histone modification
15
control
10
narrow histone mark
9
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
Date released
13
December, 2017
9
February, 2018
9
November, 2018
7
December, 2018
7
January, 2019
1
January, 2018
1
March, 2020
1
October, 2017
Available data
47
fastq
46
bam
31
bigWig
28
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
48
Homo sapiens
Biosample type
25
tissue
23
in vitro differentiated cells
Organ
596
liver
461
pancreas
317
epithelium
262
brain
226
kidney
213
heart
197
connective tissue
155
vasculature
149
blood vessel
109
limb
90
adipose tissue
87
musculature of body
69
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
11
lung
5
bone element
5
gonad
5
ovary
4
skeleton
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
31
GRCh38
29
hg19
1
hg18
Lab
48
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_slims!
Transcription
month_released!
February, 2021
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
GRO-seq
pCHi-C
tissue
spleen
20
2
1
1
1
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
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