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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
31
ATAC-seq
5
WGBS
4
DNase-seq
4
Hi-C
3
pCHi-C
2
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
Transcription
35
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
54
August, 2017
53
November, 2018
51
May, 2020
26
August, 2021
20
May, 2022
10
February, 2021
6
October, 2019
February, 2023
3
July, 2019
June, 2019
2
March, 2020
1
December, 2018
Available data
525
bam
460
fastq
458
bigWig
447
bed narrowPeak
356
bigBed narrowPeak
86
tagAlign
61
bed broadPeak
61
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
604
Homo sapiens
Biosample type
387
cell line
195
tissue
15
in vitro differentiated cells
7
primary cell
Organ
596
liver
449
pancreas
290
epithelium
231
brain
175
connective tissue
157
heart
148
kidney
127
vasculature
123
blood vessel
93
bone element
88
adipose tissue
83
limb
69
blood
69
bodily fluid
46
artery
44
musculature of body
38
nerve
25
spleen
23
embryo
22
vein
11
lung
8
eye
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
604
AMP
Genome assembly (visualization)
469
hg19
375
GRCh38
Lab
562
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
month_released!
February, 2023
June, 2019
BIOSAMPLE
ASSAY
604 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
RRBS
STARR-seq
whole genome sequencing assay
cell line
HepG2
378
1
1
2
2
2
1
tissue
liver
145
20
3
2
1
1
1
right lobe of liver
10
1
1
2
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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