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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
6
WGBS
5
ATAC-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
Transcription
50
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
20
broad histone mark
12
narrow histone mark
12
transcription factor
6
control
Date released
57
August, 2017
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
21
bam
21
bigWig
21
fastq
8
bed narrowPeak
8
tagAlign
6
bed bed3+
5
bigBed narrowPeak
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
65
Homo sapiens
Biosample type
65
tissue
1
in vitro differentiated cells
Organ
598
liver
416
pancreas
323
epithelium
262
brain
229
kidney
227
heart
179
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
86
musculature of body
83
artery
68
blood
68
bodily fluid
66
adipose tissue
42
eye
38
nerve
25
spleen
22
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
21
hg19
20
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
Transcription
month_released!
January, 2018
October, 2018
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
adipose tissue
2
3
2
1
omental fat pad
1
2
subcutaneous adipose tissue
1
1
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in vitro differentiated cells
white fat cell
1
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