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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
8
WGBS
7
ATAC-seq
3
pCHi-C
2
DNase-seq
1
RNA microarray
Assay category
Transcription
93
DNA binding
9
DNA accessibility
8
DNA methylation
Target of assay
38
histone
38
histone modification
32
control
24
broad histone mark
23
transcription factor
14
narrow histone mark
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
57
August, 2017
23
October, 2018
10
November, 2018
7
December, 2018
7
January, 2019
2
March, 2020
2
October, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
June, 2019
1
November, 2019
1
October, 2019
Available data
68
fastq
67
bam
42
bigWig
26
bed narrowPeak
22
bigBed narrowPeak
8
tagAlign
6
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bigBed broadPeak
2
tsv
1
bedpe bed3+
Organism
113
Homo sapiens
Biosample type
113
tissue
1
in vitro differentiated cells
Organ
596
liver
463
pancreas
303
epithelium
232
brain
192
heart
185
connective tissue
162
vasculature
158
blood vessel
148
kidney
97
bone element
89
adipose tissue
83
limb
81
artery
69
blood
69
bodily fluid
44
musculature of body
38
nerve
35
eye
25
spleen
23
embryo
22
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
114
AMP
Genome assembly (visualization)
40
GRCh38
40
hg19
Lab
114
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
Transcription
month_released!
June, 2019
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
WGBS
ATAC-seq
pCHi-C
DNase-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
spleen
20
2
1
1
1
subcutaneous adipose tissue
12
1
1
omental fat pad
11
1
1
white adipose tissue
12
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in vitro differentiated cells
white fat cell
1
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