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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
8
snATAC-seq
1
ATAC-seq
1
pCHi-C
Assay category
60
DNA binding
9
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
Available data
60
bam
60
fastq
55
bigWig
54
bed narrowPeak
54
bigBed narrowPeak
1
tsv
Organism
70
Homo sapiens
Biosample type
61
cell line
8
primary cell
1
tissue
Organ
596
liver
463
pancreas
303
epithelium
232
brain
192
heart
185
connective tissue
162
vasculature
158
blood vessel
148
kidney
97
bone element
89
adipose tissue
83
limb
81
artery
69
blood
69
bodily fluid
44
musculature of body
38
nerve
35
eye
25
spleen
23
embryo
22
vein
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
62
AMP
8
T1D
Genome assembly (visualization)
55
hg19
54
GRCh38
Lab
62
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_slims!
Transcription
month_released!
June, 2019
organ_slims!
skeleton
BIOSAMPLE
ASSAY
70 results
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ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
tissue
adrenal gland
1
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