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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
25
DNase-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
1
RRBS
Assay category
118
DNA binding
Transcription
28
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
93
histone
93
histone modification
57
broad histone mark
36
narrow histone mark
14
control
11
transcription factor
9
RNA binding protein
Date released
57
April, 2019
40
May, 2024
25
June, 2019
16
May, 2019
12
July, 2019
6
October, 2019
5
March, 2020
Available data
138
bigWig
132
bed narrowPeak
111
bam
83
bigBed narrowPeak
25
bed bed3+
25
bed broadPeak
25
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
3
tsv
Organism
161
Homo sapiens
Biosample type
161
tissue
Organ
598
liver
462
pancreas
323
epithelium
262
brain
229
kidney
227
heart
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
161
AMP
Genome assembly (visualization)
137
GRCh38
94
hg19
Lab
121
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assay_slims!
Transcription
month_released!
March, 2019
organ_slims!
artery
connective tissue
BIOSAMPLE
ASSAY
161 results
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ChIP-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle
35
3
4
2
1
1
1
left cardiac atrium
40
1
heart
14
18
1
1
heart right ventricle
13
1
2
1
1
right atrium auricular region
10
2
1
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