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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
5
DNase-seq
5
Hi-C
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
20
DNA binding
Transcription
7
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
May, 2019
21
October, 2019
5
July, 2019
3
June, 2019
3
March, 2020
3
November, 2017
Available data
29
bam
25
bigWig
19
bed narrowPeak
18
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
1
tsv
Organism
35
Homo sapiens
Biosample type
29
primary cell
6
tissue
Organ
598
liver
465
pancreas
318
epithelium
234
brain
224
kidney
206
heart
203
connective tissue
119
vasculature
113
blood vessel
108
limb
97
bone element
90
adipose tissue
80
musculature of body
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
26
hg19
19
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
Transcription
month_released!
May, 2019
organ_slims!
artery
embryo
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
DNase-seq
Hi-C
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
tissue
aorta
1
2
1
ascending aorta
1
thoracic aorta
1
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