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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ATAC-seq
37
ChIP-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
Transcription
77
DNA accessibility
37
DNA binding
10
DNA methylation
3
3D chromatin structure
Target of assay
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
35
February, 2023
33
June, 2019
15
April, 2019
14
February, 2021
14
July, 2019
8
May, 2019
5
March, 2020
5
May, 2024
1
October, 2019
Available data
94
bed narrowPeak
80
bam
57
bigWig
38
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
3
tsv
Organism
130
Homo sapiens
Biosample type
109
tissue
14
cell line
7
primary cell
Organ
496
liver
291
pancreas
225
epithelium
199
kidney
130
heart
124
connective tissue
98
vasculature
97
bone element
93
blood vessel
75
brain
68
blood
bodily fluid
66
limb
63
artery
57
adipose tissue
54
musculature of body
39
eye
19
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
11
lung
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
130
AMP
Genome assembly (visualization)
100
GRCh38
56
hg19
Lab
125
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
assay_slims!
Transcription
month_released!
November, 2019
organ_slims!
bodily fluid
target.investigated_as!
histone
BIOSAMPLE
ASSAY
130 results
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ATAC-seq
ChIP-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
coronary artery
36
3
2
heart left ventricle
2
11
3
4
1
1
1
heart
2
18
1
1
heart right ventricle
2
1
2
1
1
right atrium auricular region
1
4
2
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
8
6
primary cell
cardiac fibroblast
3
3
1
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