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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
30
DNase-seq
3
ATAC-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
128
DNA binding
34
DNA accessibility
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
108
histone
108
histone modification
67
broad histone mark
41
narrow histone mark
19
control
1
RNA binding protein
1
transcription factor
Date released
85
November, 2017
October, 2019
28
June, 2019
28
May, 2019
16
October, 2017
5
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
141
bam
126
bigWig
122
bed narrowPeak
121
bigBed narrowPeak
80
tagAlign
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
15
fastq
2
hdf5
2
tsv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
167
Homo sapiens
Biosample type
159
tissue
8
primary cell
Organ
592
liver
398
pancreas
291
epithelium
221
heart
205
kidney
177
brain
176
connective tissue
vasculature
116
blood vessel
97
bone element
87
musculature of body
69
blood
69
bodily fluid
66
adipose tissue
57
artery
50
limb
35
eye
25
spleen
23
embryo
18
ureter
12
skeleton
11
lung
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
stomach
1
urinary bladder
1
vein
Project
167
AMP
Genome assembly (visualization)
122
GRCh38
65
hg19
Lab
167
AMP-T2D consortium
Audit category:
4
missing controlled_by
assay_slims!
Transcription
month_released!
October, 2018
October, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
167 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
15
14
1
1
layer of hippocampus
22
caudate nucleus
15
1
substantia nigra
15
temporal lobe
15
+ See 16 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
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