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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
7
ChIP-seq
6
ATAC-seq
4
Hi-C
1
WGBS
Assay category
38
DNA accessibility
7
DNA binding
4
3D chromatin structure
Transcription
1
DNA methylation
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
Available data
46
bam
44
bed narrowPeak
39
bigWig
38
bigBed narrowPeak
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
50
Homo sapiens
Biosample type
50
tissue
Organ
592
liver
398
pancreas
291
epithelium
221
heart
205
kidney
177
brain
176
connective tissue
122
vasculature
116
blood vessel
97
bone element
87
musculature of body
69
blood
69
bodily fluid
66
adipose tissue
57
artery
50
limb
35
eye
25
spleen
23
embryo
18
ureter
12
skeleton
11
lung
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
stomach
1
urinary bladder
1
vein
Project
50
AMP
Genome assembly (visualization)
44
GRCh38
44
hg19
Lab
50
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
month_released!
October, 2018
October, 2019
BIOSAMPLE
ASSAY
50 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
tissue
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
distal epiphysis of femur
1
distal epiphysis of humerus
1
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