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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
35
DNase-seq
30
ATAC-seq
3
RRBS
2
Hi-C
2
pCHi-C
1
FAIRE-seq
Assay category
134
DNA binding
66
DNA accessibility
Transcription
3
DNA methylation
2
3D chromatin structure
Target of assay
110
histone
110
histone modification
67
broad histone mark
43
narrow histone mark
21
control
3
RNA binding protein
3
transcription factor
Date released
October, 2019
88
November, 2017
36
June, 2019
28
February, 2023
28
May, 2019
16
October, 2017
7
July, 2019
2
March, 2020
2
November, 2018
Available data
158
bed narrowPeak
152
bam
136
bigWig
130
bigBed narrowPeak
80
tagAlign
48
bed broadPeak
39
bigBed broadPeak
37
bed bed3+
18
fastq
3
bed bedMethyl
3
bigBed bedMethyl
2
hdf5
2
tsv
1
bed bed3
Organism
207
Homo sapiens
Biosample type
189
tissue
18
primary cell
Organ
592
liver
449
pancreas
291
epithelium
221
heart
205
kidney
199
connective tissue
177
brain
122
vasculature
blood vessel
97
bone element
89
adipose tissue
87
musculature of body
69
blood
69
bodily fluid
57
artery
50
limb
35
eye
25
spleen
23
embryo
18
ureter
12
skeleton
11
lung
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
stomach
1
urinary bladder
1
vein
Project
207
AMP
Genome assembly (visualization)
131
GRCh38
104
hg19
Lab
207
AMP-T2D consortium
Audit category:
4
missing controlled_by
assay_slims!
Transcription
month_released!
October, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
207 results
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ChIP-seq
DNase-seq
ATAC-seq
RRBS
Hi-C
pCHi-C
FAIRE-seq
tissue
brain
15
14
1
1
layer of hippocampus
22
retina
3
15
caudate nucleus
15
1
substantia nigra
15
+ See 18 more…
primary cell
astrocyte of the cerebellum
3
1
1
choroid plexus epithelial cell
3
1
1
retinal pigment epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
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