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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
4
ATAC-seq
1
Hi-C
Assay category
154
DNA binding
4
DNA accessibility
Transcription
1
3D chromatin structure
Target of assay
90
histone
90
histone modification
56
broad histone mark
43
control
34
narrow histone mark
21
transcription factor
15
RNA binding protein
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
154
bam
110
bed narrowPeak
110
bigWig
109
bigBed narrowPeak
59
fastq
1
bed broadPeak
1
bedpe
1
hic
Organism
159
Homo sapiens
Biosample type
159
tissue
Organ
57
heart
56
pancreas
23
adipose tissue
23
connective tissue
23
kidney
Project
159
AMP
Genome assembly (visualization)
113
hg19
111
GRCh38
Lab
154
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
1
inconsistent control read length
assay_slims!
Transcription
BIOSAMPLE
ASSAY
159 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
tissue
heart left ventricle
35
body of pancreas
33
kidney
23
endocrine pancreas
16
heart right ventricle
13
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