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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
9
WGBS
6
RRBS
5
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
98
DNA binding
Transcription
15
DNA methylation
11
DNA accessibility
Target of assay
199
histone modification
histone
109
broad histone mark
88
narrow histone mark
50
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
318
November, 2017
199
June, 2019
152
February, 2021
140
May, 2022
124
August, 2017
124
May, 2020
119
August, 2021
111
February, 2023
88
October, 2019
87
November, 2018
77
May, 2021
63
December, 2017
46
March, 2020
44
October, 2018
43
July, 2019
35
December, 2018
31
November, 2019
28
May, 2019
20
April, 2019
January, 2019
16
January, 2021
September, 2018
12
November, 2020
11
May, 2023
11
October, 2017
11
September, 2017
10
April, 2020
8
February, 2018
8
January, 2018
7
August, 2020
5
March, 2019
5
May, 2024
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
96
fastq
91
bam
61
bigWig
35
bed narrowPeak
21
bed bed3+
12
bigBed narrowPeak
11
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
4
bed broadPeak
4
bigBed broadPeak
Organism
123
Homo sapiens
Biosample type
72
tissue
31
in vitro differentiated cells
21
primary cell
Organ
56
connective tissue
33
pancreas
25
adipose tissue
22
liver
15
epithelium
7
musculature of body
Project
124
AMP
Genome assembly (visualization)
65
hg19
58
GRCh38
Lab
124
AMP-T2D consortium
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
assay_slims!
Transcription
month_released!
January, 2019
September, 2018
target.investigated_as!
histone
BIOSAMPLE
ASSAY
124 results
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ChIP-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
16
3
1
islet of Langerhans
14
1
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
skeletal muscle tissue
3
4
+ See 4 more…
in vitro differentiated cells
adipocyte
30
1
primary cell
pancreatic alpha cell
6
1
pancreatic beta cell
6
1
skeletal muscle myoblast
3
1
2
pancreatic acinar cell
1
See all biosamples
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