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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
83
ATAC-seq
9
DNase-seq
7
WGBS
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
FAIRE-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
Transcription
113
DNA binding
99
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
75
transcription factor
22
RNA binding protein
20
histone
20
histone modification
18
control
16
recombinant protein
11
narrow histone mark
9
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
179
bed narrowPeak
121
bam
119
bigWig
94
fastq
73
bigBed narrowPeak
64
xls
24
tagAlign
14
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
vcf
Organism
232
Homo sapiens
Biosample type
99
tissue
88
cell line
35
in vitro differentiated cells
11
primary cell
Organ
79
liver
73
kidney
17
pancreas
15
blood
15
bodily fluid
13
epithelium
9
spleen
6
connective tissue
2
adipose tissue
2
brain
Project
226
AMP
7
HPAP
Genome assembly (visualization)
176
GRCh38
116
hg19
Lab
125
AMP-T2D consortium
71
Katalin Susztak, Upenn
26
Bing Ren, UCSD
7
Klaus Kaestner, Upenn
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
Transcription
month_released!
April, 2018
BIOSAMPLE
ASSAY
233 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
snATAC-seq
STARR-seq
Capture-C
Hi-C
FAIRE-seq
RNA microarray
whole genome sequencing assay
tissue
kidney
64
6
1
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 5 more…
cell line
HepG2
63
1
2
1
1
GM12878
15
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
10
adipocyte
1
1
osteoblast
1
1
primary cell
pancreatic alpha cell
5
hepatocyte
4
pancreatic beta cell
2
See all biosamples
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