Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
31
ChIP-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
Transcription
82
DNA accessibility
31
DNA binding
2
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
335
November, 2017
233
October, 2019
206
June, 2019
194
August, 2017
189
May, 2021
143
February, 2021
128
May, 2020
124
August, 2021
97
February, 2023
96
May, 2019
74
November, 2018
73
December, 2017
66
April, 2019
42
May, 2022
41
July, 2019
40
March, 2020
40
May, 2024
31
December, 2018
21
January, 2019
16
February, 2018
15
October, 2017
May, 2023
10
April, 2020
8
January, 2018
8
January, 2021
6
November, 2019
5
October, 2018
2
December, 2019
2
November, 2020
1
August, 2018
1
March, 2023
1
October, 2022
Available data
106
bed narrowPeak
64
xls
32
bigWig
26
bam
16
tagAlign
5
bed bed3+
2
hic
1
bedpe bed3+
1
vcf
Organism
123
Homo sapiens
Biosample type
72
tissue
28
in vitro differentiated cells
21
cell line
3
primary cell
Organ
73
kidney
21
liver
5
connective tissue
5
epithelium
pancreas
1
adipose tissue
Project
124
AMP
Genome assembly (visualization)
90
GRCh38
45
hg19
Lab
71
Katalin Susztak, Upenn
28
AMP-T2D consortium
21
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
month_released!
May, 2023
organ_slims!
pancreas
target.investigated_as!
control
BIOSAMPLE
ASSAY
124 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
6
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
14
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
14
2
1
1
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
3
Download