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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ATAC-seq
12
ChIP-seq
5
Hi-C
1
MPRA
1
snATAC-seq
Assay category
27
DNA accessibility
Transcription
12
DNA binding
5
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
transcription factor
Date released
277
October, 2019
275
August, 2017
214
June, 2019
201
May, 2021
162
November, 2017
151
May, 2020
147
February, 2021
140
May, 2022
128
August, 2021
115
May, 2019
111
February, 2023
74
April, 2019
59
October, 2018
52
December, 2017
49
March, 2020
46
September, 2018
43
July, 2019
40
November, 2019
35
May, 2024
24
February, 2018
23
November, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
January, 2019
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
38
bam
36
bed narrowPeak
10
bigWig
5
bedpe bed3+
5
hic
3
cool
1
txt
Organism
44
Homo sapiens
Biosample type
22
tissue
15
cell line
5
in vitro differentiated cells
3
primary cell
Organ
38
pancreas
17
epithelium
1
adipose tissue
1
connective tissue
Project
42
AMP
3
HPAP
Genome assembly (visualization)
41
hg19
36
GRCh38
Lab
42
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
20
inconsistent ontology term
4
audit script error
assay_slims!
Transcription
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
45 results
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ATAC-seq
ChIP-seq
Hi-C
MPRA
snATAC-seq
tissue
islet of Langerhans
19
1
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
12
1
MIN6
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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